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#vector

11 public questions tagged with this topic.

Which element distinguishes religated YAC from vector?

YAC cloning involves ligation of insert DNA between two arms each carrying telomere, selection marker and centromere. Linearized vector without insert can recircularize through non-homologous end joining, regenerating empty YAC. SUP4, encoding suppressor tRNA for ochre mutation, serves as distinguishing marker. When SUP4 is interrupted by insert, suppressor phenotype is lost, producing red colonies in ade2-101 background, while religated empty vector retains functional SUP4 giving white colonies. CEN, ARS, URA3, TRP1 present in both forms cannot differentiate. SUP4 inactivation provides positive visual indication of recombinant formation versus vector background.

Ref: NCERT Biology Class XII Principles on Klenow fill-in labeling, Lehninger Chapter 9 DNA cloning techniques, and Molecular Cloning by Sambrook Chapter 10 documenting end-labeling of cohesive termini.

What is the size of the insert if digestion yields a single 3kb band in a 3kb vector?

Agarose gel analysis of recombinant plasmid digested with enzymes flanking insertion site normally separates vector backbone from insert as two bands. If vector alone is 3 kb and after cloning digestion still shows only a single 3 kb band of double intensity, interpretation requires understanding overlapping migration. Total recombinant is 6 kb; digestion releases 3 kb vector and 3 kb insert of identical size that co-migrate as one intense band. Without additional enzymes or size markers, single band may be misinterpreted, but careful intensity comparison indicates insert size equals vector size, here 3 kb.

Ref: NCERT Biology Class XII Principles on Klenow fill-in labeling, Lehninger Chapter 9 DNA cloning techniques, and Molecular Cloning by Sambrook Chapter 10 documenting end-labeling of cohesive termini.