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#nucleation

3 public questions tagged with this topic.

The polymerization of actin filaments follows which sequence?

Actin assembly exhibits sigmoidal kinetics reflecting cooperative nucleation mechanism. Lag phase corresponds to nucleation where monomers collide forming unstable dimer with Kd micromolar and trimer tetramer nucleus, high free energy barrier due to entropy loss and weak contacts, hence extremely slow without nucleators. Over minutes trimer accumulates reaching critical nucleus size three to four subunits, providing template for rapid elongation phase where ATP G actin adds efficiently at barbed end with near diffusion limited rate, elongating filament linearly until monomer pool depleted to critical concentration. Eventually steady state reached where on rate equals off rate at both ends, total polymer mass constant while individual subunits treadmill hydrolyzing ATP, known as steady state treadmilling. This order nucleation elongation steady state parallels crystallization, microtubule assembly and amyloid formation. Alternative orders reversing steps violate thermodynamic principle that stable nucleus must form before rapid growth. Pharmacological inhibitors target stages: latrunculin sequesters monomer preventing nucleation, cytochalasin D caps barbed end blocking elongation.

Ref: Lodish et al., Molecular Cell Biology, 9th ed., Chapter 18: Actin Assembly Nuceleation Elongation Stages.

What is the main function of the Arp2/3 complex?

Branched actin organization essential for protrusion relies on Arp2/3 complex discovering daughter filaments on sides of mother filaments. Complex comprises Arp2, Arp3 actin related proteins plus ARPC1 to ARPC5 subunits forming 220 kilodalton assembly. Inactive state holds Arp2 and Arp3 apart preventing nucleation. Upon binding nucleation promoting factor such as WASP WAVE containing VCA acidic domain delivering monomer plus side binding to mother filament via ARPC2 ARPC4 clamp, complex undergoes short pitch activation bringing Arp2 Arp3 together resembling barbed end template. Daughter filament nucleates and elongates with its pointed end capped by Arp2/3 at branch junction, preserving 70 degree angle observed by rotational shadowing. Repeated rounds create dendritic meshwork where growing plus ends push membrane outward, generating force for lamellipodia advancement, phagocytic cup closure and Listeria comet propulsion. Arp2/3 does not depolymerize filaments like cofilin, does not stabilize microtubules which is MAP function, nor transport organelles as myosin does, its core function is branched nucleation.

Ref: Alberts et al., Molecular Biology of the Cell, 7th ed., Chapter 16: Arp2/3 Complex and Branched Nucleation.

Which of the following proteins nucleates actin polymerization and remains bound to the (+) end?

Spontaneous formation of actin nuclei is thermodynamically unfavorable because dimers and trimers dissociate rapidly, creating lag phase in polymerization assays. Formins overcome this by stabilizing nucleation intermediate and remaining processively attached. Family members such as mDia1, mDia2, INF2, FMNL and yeast Bni1 and Bnr1 contain FH1 proline rich region and FH2 donut shaped dimer. Each FH2 hemidimer contacts actin, encircling barbed end and forming stable dimer nucleus that templates addition of subsequent ATP actin subunits. FH1 recruits profilin ATP actin via polyproline interactions, increasing effective concentration near growing end up to fifty fold and accelerating elongation to over 100 subunits per second while protecting from capping proteins CapZ and gelsolin. Processive stepping mechanism allows formin to walk with barbed end as filament grows, generating long unbranched filaments that compose stress fibers, filopodia, lamellar arcs and cytokinetic contractile rings. This contrasts with Arp2/3 which branches, and with sequestering proteins thymosin beta4 and profilin alone regulating monomer pool.

Ref: Alberts et al., Molecular Biology of the Cell, 7th ed., Chapter 16: Actin Nucleation by Formins and FH Domains.