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#acidic environments

2 public questions tagged with this topic.

Bacteria use urease for survival in acidic environments by:

Survival in strongly acidic niches such as stomach lumen colonized by Helicobacter pylori causing gastritis and ulcer disease requires exceptionally efficient neutralization of extreme acidity. Urease is extraordinarily active nickel-dependent metalloenzyme encoded by ureABIEFGH operon containing structural subunits UreA and UreB plus accessory proteins UreE, UreF, UreG, UreD for nickel insertion, hydrolyzing urea abundant in gastric juice and urine into two molecules of ammonia and one carbon dioxide. Ammonia immediately protonates to ammonium NH4+ consuming protons and raising local pH from about 2 to near neutrality, creating protective alkaline cloud that prevents acid denaturation of periplasmic and surface proteins. Carbon dioxide hydrates via carbonic anhydrase to bicarbonate adding second buffering layer. In H. pylori urease represents up to 10 percent total cellular protein. It does not aid protein folding like chaperone nor degrade antibiotics like beta-lactamase nor block glycolysis; its chemical product directly elevates pH and simultaneously provides nitrogen assimilation pathway via glutamine synthetase, underpinning colonization success and pathogenesis.

Ref: Madigan et al., Brock Biology of Microorganisms, 16th ed., Chapter 6: Urease and Acid Survival via Ammonia Production.

Which bacterial stress response is activated in acidic environments?

Acid tolerance is vital survival strategy for enteric bacteria such as Escherichia coli, Salmonella Typhimurium and Shigella flexneri that must traverse gastric compartment where pH can fall to 1-3 and organic acid stress in intestine. Enterobacteriaceae deploy multiple amino acid decarboxylase antiporter systems for pH homeostasis. Under acidic conditions, inducible decarboxylases such as CadA lysine decarboxylase, AdiA arginine decarboxylase and GadA/B glutamate decarboxylases consume an intracellular proton during decarboxylation of substrate to produce cadaverine, agmatine and gamma-aminobutyrate respectively plus CO2. The more alkaline product is exported via specific antiporters CadB, AdiC and GadC in 1:1 exchange for fresh extracellular substrate, effectively exporting proton equivalents and raising internal pH by up to 0.5 units. CadB-dependent lysine decarboxylation generates cadaverine that additionally blocks outer membrane porins OmpF and OmpC to reduce proton leak. This system raises membrane potential, maintains enzyme function and prevents DNA damage. PhoP-PhoQ senses Mg2+ limitation and antimicrobial peptides, OxyR senses peroxide, SoxR senses superoxide, so acid-specific decarboxylation antiporter module represents the major pH homeostasis strategy underpinning enteric pathogenesis.

Ref: Prescott's Microbiology, 11th ed., Chapter 7: Acid Stress Response and CadB Decarboxylase System.