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#protein structure

108 public questions tagged with this topic.

Which protein has only tyrosine, tryptophan buried in Z and surface-exposed in Y?

Interpreting absorption and fluorescence fingerprints distinguishes protein composition and tryptophan localization. Protein containing only tyrosine lacks tryptophan, showing λmax near 274 nm, low extinction and emission ~303 nm, designated X. Proteins containing tryptophan exhibit additional 280 nm absorption. Solvent-exposed tryptophan on protein surface contacts water, undergoes full solvent relaxation, emitting near 350-355 nm representing Y. Buried tryptophan within hydrophobic core experiences nonpolar environment restricting relaxation, emitting blue-shifted around 308-335 nm representing Z. Correlating A280, λem and quenching allows assignment of X as only Tyr, Y surface Trp, Z buried Trp.

Ref: NCERT Biology Class XII Principles on Klenow fill-in labeling, Lehninger Chapter 9 DNA cloning techniques, and Molecular Cloning by Sambrook Chapter 10 documenting end-labeling of cohesive termini.

CD change upon protease digestion shows:

Protease hydrolysis cleaves peptide bonds, fragmenting chain and disrupting hydrogen bonded networks that stabilize helices and sheets. Far-ultraviolet circular dichroism monitors these networks via amide n to pi-star and pi to pi-star bands; loss of distinct minima at 208, 222 or 218 nanometers and appearance of random coil signature near 195 nanometers reflects conformational alteration and unfolding of remaining fragments. Primary sequence composition change alone without structural rearrangement would not alter CD significantly; fluorescence quenching reports side chain environment, disulfide cleavage requires reductant, not protease.

Ref: NCERT Biology Class XII Principles on Klenow fill-in labeling, Lehninger Chapter 9 DNA cloning techniques, and Molecular Cloning by Sambrook Chapter 10 documenting end-labeling of cohesive termini.