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#ribosome

32 public questions tagged with this topic.

The Svedberg (S) value of eukaryotic ribosomes is:

Sedimentation coefficient measured in Svedberg units depends on molecular weight, density and shape, not strictly additive, so sum of subunit S values does not equal particle S value. Cytoplasmic ribosomes of eukaryotes consist of forty S small subunit containing eighteen S rRNA and approximately thirty three proteins and sixty S large subunit containing twenty eight S, five point eight S and five S rRNA plus about forty seven proteins, together associating into eighty S monosome of three point two megadaltons and about twenty five nanometers diameter when translating. Prokaryotic ribosomes are smaller thirty S and fifty S joining into seventy S. Mitochondrial ribosomes sediment near fifty five S despite containing two subunits twenty eight S and thirty nine S, while chloroplast resemble seventy S. Values fifty S, seventy S, ninety S thus refer to bacterial subunits, prokaryotic ribosomes, or immature nucleolar pre-ribosomes, not mature functional eukaryotic cytosolic translation machine. This size distinction underlies differential antibiotic sensitivity: aminoglycosides target thirty S decoding, chloramphenicol fifty S peptidyl transferase, cycloheximide sixty S translocation, enabling selective inhibition without affecting host cytosolic translation, important for therapy.

Ref: Warner Cell Biol; eukaryotic 80S 40S+60S not additive, distinct from bacterial 70S.

Tunnel for nascent polypeptide is present in

Tunnel guiding nascent polypeptide from catalytic site to exterior lies exclusively in large ribosomal subunit, 50S in bacteria, 60S in eukaryotes and 39S in mitochondria. Constructed from conserved rRNA domains, it is about 100 angstroms long and 10 to 20 angstroms wide, accommodating 30 to 40 amino acids in extended conformation. Its confinement restricts premature tertiary folding, promotes secondary structure formation, senses stalling sequences, and positions exit site where chaperones and translocation machinery interact, coupling synthesis to folding, localization and quality control essential for proteostasis.

Ref: Watson Molecular Biology of the Gene, 7th ed., Chapter 15, Large subunit tunnel for nascent chain co-translational folding