Transposase enzyme binds to
Transposase enzyme exhibits sequence-specific DNA binding recognizing terminal inverted repeats through specialized domains such as helix-turn-helix or RNase H-like DDE catalytic core. Upon binding, monomers dimerize bringing both ends together in paired complex, positioning catalytic residues to nick one strand at each end generating 3'-OH nucleophiles for strand transfer into target DNA. Specificity for TIRs prevents random cleavage, and cooperative binding ensures coordinated excision. Concentration, methylation status, and host factors modulate activity to limit transposition burden. This
Ref: Watson et al., Molecular Biology of the Gene, 7th ed., Chapter 12: Transposase Binding Specificity for TIRs
