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#replication control

3 public questions tagged with this topic.

In the regulation of DNA replication, which factor ensures that origins fire only once per cycle?

Eukaryotes must replicate each DNA segment exactly once per cell cycle to avoid re-replication which causes double-strand breaks and genomic instability. Origin licensing is restricted to G1 when CDK activity low: ORC, Cdc6, and Cdt1 load double hexamer of MCM2-7 helicase. At S onset, CDK and DDK activate helicase, but re-loading must be blocked. Geminin protein accumulating from S through early mitosis directly binds Cdt1 through extended coiled-coil domain, sterically occluding MCM-interacting surface and preventing second helicase loading. Concurrently, cyclin A-CDK2 phosphorylates Cdt1 and Cdc6, promoting nuclear export and SCF-mediated ubiquitination. APC/C-Cdh1 degrades geminin in late mitosis and G1, resetting system to allow new licensing for next cycle. Depletion of geminin in human cells triggers partial re-replication, ATR checkpoint activation, and apoptosis. Overexpression of geminin and Cdt1 observed in many tumors correlates with aneuploidy and poor prognosis, confirming its role as essential guard of single genome duplication. This circuitry is highly conserved across eukaryotes, integrating growth factor signals, DNA damage surveillance, and developmental cues, and its disruption frequently underlies oncogenesis, providing targets for checkpoint inhibitors and cancer therapeutics.

Ref: McGarry & Kirschner, Cell 1998, Geminin Function. Fragkos et al., Nature Rev Mol Cell Biol 2015.

Which factor ensures that DNA replication occurs only once per cell cycle?

Guaranteeing exactly one round of DNA replication per cycle requires blocking re-loading of MCM helicases onto origins after they have fired. Two mechanisms converge. First, CDK2 phosphorylates licensing factors Cdc6 marking for SCF degradation and nuclear export, and Cdt1 phosphorylation marking for CRL4-Cdt2 ubiquitination triggered by PCNA at replication forks. Geminin provides second safeguard independent of phosphorylation. Absent in G1 because APC/C-Cdh1 ubiquitinates it, geminin begins accumulation from early S reaching high levels through G2 and M. It binds with high affinity to coiled-coil domain of Cdt1, occluding interaction surface for MCM2-7 recruitment to origin recognition complex, thereby preventing formation of new pre-replicative complexes at fired origins. In M phase, APC/C-Cdc20 and later APC/C-Cdh1 degrade geminin, releasing Cdt1 for licensing only when CDK activity low in next G1. Loss of geminin in human cells induces rereplication detectable as >4N DNA content, induction of DNA damage response via ATR-Chk1-p53, and apoptosis, while overexpression arrests cells at G1/S, underscoring essential role of geminin-Cdt1 balance maintaining diploid stability.

Ref: McGarry & Kirschner, Geminin Prevents Rereplication, Cell 1998; Arias & Walter, Mechanism of Cdt1 Regulation Preventing Rereplication.

SeqA protein binds to

Replication produces hemimethylated GATC where parental strand remains methylated by Dam methylase but newly synthesized strand unmethylated temporarily for several minutes. SeqA protein specifically recognizes clusters of hemimethylated GATC abundant in oriC containing eleven sites. Binding sequesters oriC at membrane for roughly one third of cell cycle blocking DnaA re-binding and preventing reinitiation until Dam fully methylates origin. This sequestration mechanism enforces once-per-cycle replication and coordinates initiation timing with chromosome segregation. Fully methylated or completely unmethylated DNA poorly bound by SeqA.

Ref: Alberts et al., Chapter 5 and Kleckner studies: SeqA binding hemimethylated oriC and sequestration timing