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#peptide sequencing

2 public questions tagged with this topic.

Which technique can sequence a 25-residue peptide directly?

Determining amino acid order of a 25-residue peptide requires fragmentation along peptide backbone to generate overlapping ions. Circular dichroism assesses secondary structure, SDS-PAGE estimates molecular size, and X-ray diffraction requires crystals unsuitable for short peptides. Tandem mass spectrometry, MS/MS, isolates chosen precursor ion and fragments it via collision-induced dissociation, producing b and y ion series covering sequence. Modern Orbitrap or quadrupole-time-of-flight instruments achieve sufficient resolution and mass accuracy to read full sequence directly, enabling rapid peptide sequencing without Edman degradation in proteomics workflows for biological samples.

Ref: NCERT Biology Class XII Principles on Klenow fill-in labeling, Lehninger Chapter 9 DNA cloning techniques, and Molecular Cloning by Sambrook Chapter 10 documenting end-labeling of cohesive termini.

Which of the following is a method for determining the N-terminal amino acid of a peptide?

Sanger’s reagent (DNFB) is the scientifically accurate answer to this question. Within the study of Protein, this concept is well-established through extensive research and is documented in standard scientific literature. The specific properties, mechanisms, or characteristics of Sanger’s reagent (DNFB) directly address what is being asked. Among the other options, Cyanogen bromide, Carboxypeptidase A, and Edman degradation do not correctly answer this question because they either refer to different concepts, describe properties of other molecules or processes, or represent common misconceptions about this topic.

Ref: Lehninger Principles of Biochemistry, Nelson & Cox, 8th Ed., Ch. 4