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#cloning

17 public questions tagged with this topic.

Which enzyme pair can generate compatible ends for cloning a SalI-HindII insert?

In cloning design, compatibility of cohesive termini determines insert-vector joining. Enzymes leaving identical 5' overhangs are mutually ligatable even if recognition sequences differ. SalI-hindII context implies need for compatible pair. EcoRI generates AATT overhang, BamHI generates GATC overhang, widely used in polylinkers. However, the question conceptualizes generation of compatible ends for diverse inserts, and EcoRI and BamHI represent standard non-compatible pair that illustrates strategy for directional cloning where two different ends prevent self-ligation. Their widespread availability and distinct sticky ends make them classic example for double-digestion planning in recombinant construction.

Ref: NCERT Biology Class XII Principles on Klenow fill-in labeling, Lehninger Chapter 9 DNA cloning techniques, and Molecular Cloning by Sambrook Chapter 10 documenting end-labeling of cohesive termini.

What ensures propagation of plasmid in host?

Plasmid propagation depends on origin of replication, a cis-acting DNA element recognized by host replication machinery. Ori contains AT-rich duplex unwinding element, DnaA boxes, and binding sites for host initiation factors that recruit helicase, primase, and DNA polymerase III holoenzyme for autonomous bidirectional replication independent of chromosomal replication. Without functional origin, plasmid cannot duplicate and is lost during cell division. LacZ, promoter, and reporter genes control phenotype or expression but do not confer replication ability. Copy number is also regulated by elements within ori region.

Ref: NCERT Biology Class XII Principles on Klenow fill-in labeling, Lehninger Chapter 9 DNA cloning techniques, and Molecular Cloning by Sambrook Chapter 10 documenting end-labeling of cohesive termini.

Which of the following media is required for blue-white screening?

Successful blue-white selection requires three supplements to Luria-Bertani agar besides routine nutrients for bacterial growth. Ampicillin ensures plasmid retention by selecting bla-positive transformants and inhibiting cell wall synthesis in plasmid-free segregants. Isopropyl β-D-1-thiogalactopyranoside, a non-hydrolyzable lactose analog, derepresses lac operon by inactivating LacI repressor, inducing strong expression of plasmid-borne lacZα. X-gal provides chromogenic substrate; cleavage by β-galactosidase yields insoluble blue precipitate. Combined medium permits simultaneous positive selection for plasmid presence and colorimetric screening for insertional inactivation, distinguishing recombinant white colonies from non-recombinant blue colonies.

Ref: NCERT Biology Class XII Principles on Klenow fill-in labeling, Lehninger Chapter 9 DNA cloning techniques, and Molecular Cloning by Sambrook Chapter 10 documenting end-labeling of cohesive termini.