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#sedimentation coefficient

3 public questions tagged with this topic.

The Svedberg (S) value of eukaryotic ribosomes is:

Sedimentation coefficient measured in Svedberg units depends on molecular weight, density and shape, not strictly additive, so sum of subunit S values does not equal particle S value. Cytoplasmic ribosomes of eukaryotes consist of forty S small subunit containing eighteen S rRNA and approximately thirty three proteins and sixty S large subunit containing twenty eight S, five point eight S and five S rRNA plus about forty seven proteins, together associating into eighty S monosome of three point two megadaltons and about twenty five nanometers diameter when translating. Prokaryotic ribosomes are smaller thirty S and fifty S joining into seventy S. Mitochondrial ribosomes sediment near fifty five S despite containing two subunits twenty eight S and thirty nine S, while chloroplast resemble seventy S. Values fifty S, seventy S, ninety S thus refer to bacterial subunits, prokaryotic ribosomes, or immature nucleolar pre-ribosomes, not mature functional eukaryotic cytosolic translation machine. This size distinction underlies differential antibiotic sensitivity: aminoglycosides target thirty S decoding, chloramphenicol fifty S peptidyl transferase, cycloheximide sixty S translocation, enabling selective inhibition without affecting host cytosolic translation, important for therapy.

Ref: Warner Cell Biol; eukaryotic 80S 40S+60S not additive, distinct from bacterial 70S.

Sedimentation coefficient depends on

Sedimentation coefficient S measured in Svedberg units quantifies particle velocity in ultracentrifuge under standard conditions. It does not directly equal molecular weight because hydrodynamic friction matters. S depends on molecular mass, partial specific volume, solvent density, and shape expressed via frictional coefficient. Compact spherical particles sediment faster than elongated rods of same mass due to lower drag. Hence mitochondrial 55S being more massive than bacterial 70S yet sedimenting slower illustrates shape and density effects, as proteins increase porosity and lower sedimentation despite higher mass.

Ref: Berg et al., Biochemistry, 9th ed., Chapter 5, Svedberg coefficient dependence on mass, shape, and friction