Practice question
Question
Linkage is considered significant when LOD score is
Explanation
Human genetics requires stringent criterion because 23 chromosome pairs create many opportunities for chance cosegregation. Statistical tradition established LOD 3 as significant and LOD -2 as exclusion after Newton Morton analysis of prior odds. At LOD 3 likelihood favoring linkage exceeds 1000:1, compensating prior odds of unlinked loci about 1:50 and providing genome-wide Type I error control near 0.05. Below 3 evidence considered suggestive but inconclusive, prompting collection additional families. For complex traits newer threshold 3.3 from Lander and Kruglyak accounts higher multiple testing burden in genome scans.