Red-Green color blindness is an X-linked recessive disorder. In a population which is in the Hardy- Weinberg equilibrium
The principle of Mendelian segregation explains that allele distribution and recombination generate phenotypic variation. Hence 1 in 1000000 fits best because it follows segregation and linkage principles, as documented in authoritative sources on genetics.
Ref: Hartl and Jones, Genetics: Analysis of Genes and Genomes, 8th Edition, Chapter 7, Mutation and DNA Repair, covers mutation types, repair pathways, chromosomal aberrations and genome stability relevant to human genetic disorders.